HapBound-GC and SHRUB-GC

Software accompaniment to
Song, Y.S., Ding, Z., Gusfield, D., Langley, C.H., and Wu, Y. Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations, Proceedings of RECOMB 2006, pp. 231-245.

Note: Files can be downloaded using "Save Link/Target As..." After downloading the softwares, you may need to change file access permissions.
(e.g. chmod u+x HapBound-GC)

Lower bound

Upper bound

Example data sets

Example Ancestral Recombination Graph (ARG)

Recommended software for viewing the ARGs generated by SHRUB

GIF files needed for graphics