Publications

Journal articles

  • Y.H. Chang, R. Dobbe, P. Bhushan, J.W. Gray and C. Tomlin, "Reconstruction of gene regulatory networks based on repairing sparse low-rank matrices", IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015 [pdf]
  • A. Abate*, S. Vincent*, R. Dobbe*, A. Silletti, N. Master, J. Axelrod and C. Tomlin, “A Mechanical Modeling Framework for the Study of Epithelial Morphogenesis”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 9, no. 6, pp. 1607-1620, November 2012 [pdf]

Peer-reviewed conference articles and abstracts

  • M. Chapman, T. Rosom, R. Dobbe, R. Sears and C. Tomlin, "A linear time-invariant model of phenotype dynamics in breast cancer cell populations". (Submitted)
  • O. Sondermeijer*, R. Dobbe*, D. Arnold, C. Tomlin and T. Keviczky, "Regression-based Inverter Control for Decentralized Optimal Power Flow and Voltage Regulation", IEEE Power & Energy Society General Meeting, Boston, July 2016 [pdf]
  • M. Sankur, D. Arnold, R. Dobbe, K. Brady, D. Callaway and A. Von Meier, "Optimal Dispatch of Reactive Power for Voltage Regulation and Balancing in Unbalanced Distribution Systems" IEEE Power & Energy Society General Meeting, Boston, July 2016
  • R. Dobbe, D. Arnold, D. Callaway and C. Tomlin, "Real-Time Distribution Grid State Estimation with Limited Sensors and Load Forecasting", International Conference on Cyber-Physical Systems, Vienna, April 2016
  • Y.H. Chang, R. Dobbe, P. Bhushan, J.W. Gray and C. Tomlin, "Retrieving Common Dynamics of Gene Regulatory Network under Various Perturbations", Proceedings of the 54th IEEE Conference on Decision and Control, December 2015
  • M. Chapman, T. Rosom, R. Dobbe, R. Sears and C. Tomlin, "A linear time-invariant model of phenotype dynamics in breast cancer cell populations", 16th International Conference on Systems Biology, Singapore, November 2015 (Abstract)
  • M. Chapman, T. Rosom, R. Dobbe, R. Sears and C. Tomlin, "A linear time-invariant model of phenotype dynamics in breast cancer cell populations", The 8th Annual RECOMB/ISCB RSG Conference, Philadelphia, November 2015 (Abstract, accepted for oral presentation) [url]
  • R. Dobbe, Y.H. Chang, J. Korkola, J.W. Gray and C. Tomlin, "Heterogeneity in cancer dynamics: A convex formulation to dissect dynamic trajectories and infer LTV models of networked systems", Proceedings of the 2015 American Control Conference, July 2015 [url]
  • Y.H. Chang, R. Dobbe, P. Bhushan, J.W. Gray and C. Tomlin, "Reconstruction of gene regulatory networks based on repairing sparse low-rank matrices", The 7th Annual RECOMB/ISCB RSG Conference, San Diego, November 2014 (Abstract, accepted for oral presentation) [url]
  • R. Dobbe, Y.H. Chang, J. Korkola, J.W. Gray and C. Tomlin, "An efficient algorithm to retrieve a dynamic model and heterogeneous treatment response in HER2+ breast cancer", 15th International Conference on Systems Biology, Melbourne, September 2014 (Abstract)
  • R. Dobbe, A. Abate, S. Vincent, A. Siletti, N. Master, J. Axelrod and C. Tomlin, "A Mechanical Modeling Framework for the Study of Epithelial Morphogenesis", 11th International Conference on Systems Biology, Edinburgh, October 2010 (Abstract, accepted for oral presentation)

Other

  • Book chapter: R. Dobbe and C. Tomlin, "Hybrid Systems Modeling for (Cancer) Systems Biology", National Cancer Institute 'Handbook of Mathematical Methods in Cancer Biology', 2015 [url]
  • MSc Thesis: R. Dobbe, “A Mathematical Model for Epithelial Cellular Networks - Development, Analysis, and Integration”, Master of Science in Systems & Control, TU Delft, July 2010 [url]